Distinct rpsC single nucleotide polymorphism lineages of Flavescence dorée subgroup 16SrV-D phytoplasma co-infect Vitis vinifera L.
Identifieur interne : 000724 ( Main/Exploration ); précédent : 000723; suivant : 000725Distinct rpsC single nucleotide polymorphism lineages of Flavescence dorée subgroup 16SrV-D phytoplasma co-infect Vitis vinifera L.
Auteurs : F. Quaglino [Italie] ; P. Casati ; P A BiancoSource :
- Folia microbiologica [ 1874-9356 ] ; 2010.
Descripteurs français
- KwdFr :
- ADN bactérien (composition chimique), ADN bactérien (génétique), ADN ribosomique (génétique), ARN ribosomique 16S (génétique), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Données de séquences moléculaires (MeSH), Italie (MeSH), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Phytoplasma (classification), Phytoplasma (génétique), Phytoplasma (isolement et purification), Polymorphisme de nucléotide simple (MeSH), Polymorphisme de restriction (MeSH), Profilage d'ADN (MeSH), Protéines bactériennes (génétique), Protéines ribosomiques (génétique), Réaction de polymérisation en chaîne (MeSH), Similitude de séquences (MeSH), Vitis (microbiologie).
- MESH :
- composition chimique : ADN bactérien, Phytoplasma.
- génétique : ADN bactérien, ADN ribosomique, ARN ribosomique 16S, Phytoplasma, Protéines bactériennes, Protéines ribosomiques.
- isolement et purification : Phytoplasma.
- microbiologie : Maladies des plantes, Vitis.
- Analyse de regroupements, Analyse de séquence d'ADN, Données de séquences moléculaires, Italie, Phylogenèse, Polymorphisme de nucléotide simple, Polymorphisme de restriction, Profilage d'ADN, Réaction de polymérisation en chaîne, Similitude de séquences.
- Wicri :
- geographic : Italie.
English descriptors
- KwdEn :
- Bacterial Proteins (genetics), Cluster Analysis (MeSH), DNA Fingerprinting (MeSH), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (genetics), Italy (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Phytoplasma (classification), Phytoplasma (genetics), Phytoplasma (isolation & purification), Plant Diseases (microbiology), Polymerase Chain Reaction (MeSH), Polymorphism, Restriction Fragment Length (MeSH), Polymorphism, Single Nucleotide (MeSH), RNA, Ribosomal, 16S (genetics), Ribosomal Proteins (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology (MeSH), Vitis (microbiology).
- MESH :
- chemical , chemistry : DNA, Bacterial.
- chemical , genetics : Bacterial Proteins, DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S, Ribosomal Proteins.
- geographic : Italy.
- classification : Phytoplasma.
- genetics : Phytoplasma.
- isolation & purification : Phytoplasma.
- microbiology : Plant Diseases, Vitis.
- Cluster Analysis, DNA Fingerprinting, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Polymorphism, Single Nucleotide, Sequence Analysis, DNA, Sequence Homology.
Abstract
During a survey on grapevine yellows disease complex in vineyards of Lombardy region (northern Italy), phytoplasmas associated with Flavescence dorée disease were identified in symptomatic grapevines. Polymerase chain reaction and restriction fragment length polymorphism (RFLP) analyses of 16S rDNA revealed the prevalence of phytoplasmal subgroup 16SrV-D. Bioinformatic analyses of nucleotide sequences of rplV and rpsC genes, amplified from 16SrV-D phytoplasma infected grapevines and cloned, underscored the presence of five confirmed rpsC single nucleotide polymorphism (SNP) lineages, determined by different combination of SNPs at nucleotide positions 29, 365, 680, and 720 of rpsC gene. Virtual and actual RFLP analyses with the enzyme TaqI validated the presence of these SNPs. Co-infections by up to four distinct rpsC SNP lineages of 16SrV-D phytoplasma were found in grapevines. These results could open new perspectives for the study of the ecology and the epidemiology of Flavescence dorée.
DOI: 10.1007/s12223-010-0037-2
PubMed: 20526838
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Polymerase chain reaction and restriction fragment length polymorphism (RFLP) analyses of 16S rDNA revealed the prevalence of phytoplasmal subgroup 16SrV-D. Bioinformatic analyses of nucleotide sequences of rplV and rpsC genes, amplified from 16SrV-D phytoplasma infected grapevines and cloned, underscored the presence of five confirmed rpsC single nucleotide polymorphism (SNP) lineages, determined by different combination of SNPs at nucleotide positions 29, 365, 680, and 720 of rpsC gene. Virtual and actual RFLP analyses with the enzyme TaqI validated the presence of these SNPs. Co-infections by up to four distinct rpsC SNP lineages of 16SrV-D phytoplasma were found in grapevines. These results could open new perspectives for the study of the ecology and the epidemiology of Flavescence dorée.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20526838</PMID><DateCompleted><Year>2010</Year><Month>09</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1874-9356</ISSN><JournalIssue CitedMedium="Internet"><Volume>55</Volume><Issue>3</Issue><PubDate><Year>2010</Year><Month>May</Month></PubDate></JournalIssue><Title>Folia microbiologica</Title><ISOAbbreviation>Folia Microbiol (Praha)</ISOAbbreviation></Journal><ArticleTitle>Distinct rpsC single nucleotide polymorphism lineages of Flavescence dorée subgroup 16SrV-D phytoplasma co-infect Vitis vinifera L.</ArticleTitle><Pagination><MedlinePgn>251-7</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s12223-010-0037-2</ELocationID><Abstract><AbstractText>During a survey on grapevine yellows disease complex in vineyards of Lombardy region (northern Italy), phytoplasmas associated with Flavescence dorée disease were identified in symptomatic grapevines. Polymerase chain reaction and restriction fragment length polymorphism (RFLP) analyses of 16S rDNA revealed the prevalence of phytoplasmal subgroup 16SrV-D. Bioinformatic analyses of nucleotide sequences of rplV and rpsC genes, amplified from 16SrV-D phytoplasma infected grapevines and cloned, underscored the presence of five confirmed rpsC single nucleotide polymorphism (SNP) lineages, determined by different combination of SNPs at nucleotide positions 29, 365, 680, and 720 of rpsC gene. Virtual and actual RFLP analyses with the enzyme TaqI validated the presence of these SNPs. Co-infections by up to four distinct rpsC SNP lineages of 16SrV-D phytoplasma were found in grapevines. These results could open new perspectives for the study of the ecology and the epidemiology of Flavescence dorée.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Quaglino</LastName><ForeName>F</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Dipartimento di Produzione Vegetale - Sezione Patologia Vegetale, Università degli Studi, 20133, Milan, Italy. fabio.quaglino@unimi.it</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Casati</LastName><ForeName>P</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Bianco</LastName><ForeName>P A</ForeName><Initials>PA</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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Casati</name></noCountry><country name="Italie"><region name="Lombardie"><name sortKey="Quaglino, F" sort="Quaglino, F" uniqKey="Quaglino F" first="F" last="Quaglino">F. Quaglino</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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